PH01004658G0010's details annotation
1.Annotation
ICBR annotation: 25.3 kDa vesicle transport protein, putative, expressed
Blast result AT1G11890 : 3.00E-109
Blast annotation: Synaptobrevin family protein
2.Location
Scaffold: PH01004658
Strand: -
| Region | Start | End |
| gene | 1181 | 5362 |
| mRNA | 1181 | 5362 |
| exon | 1181 | 1274 |
| exon | 2200 | 2276 |
| exon | 2613 | 2759 |
| exon | 2855 | 3023 |
| exon | 3801 | 5362 |
| CDS | 1191 | 1274 |
| CDS | 2200 | 2276 |
| CDS | 2613 | 2759 |
| CDS | 2855 | 3023 |
| CDS | 3801 | 3998 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13774.5 | Longin | 36 | 118 |
| PF00957.20 | Synaptobrevin | 133 | 213 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| SNARE interactions in vesicular transport | vesicle transport protein SEC22 | ko04130 | K08517 |
| Phagosome | vesicle transport protein SEC22 | ko04145 | K08517 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006810 | transport |
| GO:0016021 | integral to membrane |
| GO:0016192 | vesicle-mediated transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.