PH01004668G0050's details annotation
1.Annotation
ICBR annotation: exo70 exocyst complex subunit domain containing protein, expressed
Blast result AT5G50380 : 3.00E-156
Blast annotation: exocyst subunit exo70 family protein F1
2.Location
Scaffold: PH01004668
Strand: +
| Region | Start | End |
| gene | 23559 | 26825 |
| mRNA | 23559 | 26825 |
| exon | 23559 | 26825 |
| CDS | 24131 | 26128 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000462 | exocyst, microtubule binding, Ribosome_biogenesis_in_eukaryotes microtubule cytoskeleton organization, exocytosis, cytokinesis cellular amino acid metabolic process, |
| coexpression network | CFinderM000622 | exocyst, SOS_response DNA-dependent ATPase activity, single-stranded DNA binding, DNA metabolic process, exocytosis, RLK-Pelle_RLCK-VIIa-2 (from iTAK) NAC Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03081.14 | Exo70 | 277 | 649 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000145 | exocyst |
| GO:0006887 | exocytosis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.