PH01004678G0050's details annotation
1.Annotation
ICBR annotation: leaf senescence related protein, putative, expressed
Blast result AT3G55990 : 7.00E-137
Blast annotation: Plant protein of unknown function (DUF828)
2.Location
Scaffold: PH01004678
Strand: -
| Region | Start | End |
| gene | 23515 | 31461 |
| mRNA | 23515 | 31461 |
| exon | 23515 | 24407 |
| exon | 26800 | 26955 |
| exon | 27132 | 27331 |
| exon | 27555 | 27726 |
| exon | 27873 | 28222 |
| exon | 30792 | 31461 |
| CDS | 24044 | 24407 |
| CDS | 26800 | 26955 |
| CDS | 27132 | 27331 |
| CDS | 27555 | 27726 |
| CDS | 27873 | 28222 |
| CDS | 30792 | 30902 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000632 | Zeatin_biosynthesis NAC Transcription_Regulator(from PlantTFDB) WRKY Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14416.5 | PMR5N | 98 | 150 |
| PF13839.5 | PC-Esterase | 152 | 441 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.