PH01004681G0060's details annotation
1.Annotation
ICBR annotation: CCR4-NOT transcription factor, putative, expressed
Blast result AT5G18230 : 1.80E-79
Blast annotation: transcription regulator NOT2/NOT3/NOT5 family protein
2.Location
Scaffold: PH01004681
Strand: +
| Region | Start | End |
| gene | 32260 | 38039 |
| mRNA | 32260 | 38039 |
| exon | 32260 | 32518 |
| exon | 33421 | 33531 |
| exon | 34340 | 34429 |
| exon | 34532 | 34678 |
| exon | 34808 | 34918 |
| exon | 35151 | 35219 |
| exon | 35550 | 36302 |
| exon | 36670 | 36831 |
| exon | 37467 | 37530 |
| exon | 37686 | 38039 |
| CDS | 32291 | 32518 |
| CDS | 33421 | 33531 |
| CDS | 34340 | 34429 |
| CDS | 34532 | 34678 |
| CDS | 34808 | 34918 |
| CDS | 35151 | 35219 |
| CDS | 35550 | 36302 |
| CDS | 36670 | 36831 |
| CDS | 37467 | 37530 |
| CDS | 37686 | 37849 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04065.14 | Not3 | 114 | 208 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.