Annotation of co-expression genes

PH01004685G0110's details annotation

1.Annotation

ICBR annotation: jmjC domain containing protein, expressed

Blast result AT1G09060 : 1.00E-112
Blast annotation: Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase

2.Location

Scaffold: PH01004685
Strand: -

RegionStartEnd
gene5491462074
mRNA5491462074
exon5491455213
exon5547555594
exon5573255817
exon5621156283
exon5669856796
exon5698557314
exon5791758676
exon5879458848
exon5894159073
exon5918059279
exon6051160653
exon6075762074
CDS5520855213
CDS5547555594
CDS5573255817
CDS5621156283
CDS5669856796
CDS5698557314
CDS5791758676
CDS5879458848
CDS5894159073
CDS5918059279
CDS6051160653
CDS6075761137

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)Jumonji

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08879.9WRC545
PF10497.8zf-4CXXC_R1146207
PF02373.21JmjC655729

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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