Annotation of co-expression genes

PH01004709G0060's details annotation

1.Annotation

ICBR annotation: nodal modulator 1 precursor, putative, expressed

Blast result AT3G62360 : 0.00E+00
Blast annotation: Carbohydrate-binding-like fold

2.Location

Scaffold: PH01004709
Strand: +

RegionStartEnd
gene3596155117
mRNA3596155117
exon3596137348
exon3771037796
exon3799338049
exon3814038204
exon3829938465
exon3942039481
exon3967339756
exon3989740053
exon4085840973
exon4141241540
exon4312043191
exon4329143386
exon4346543542
exon4692547362
exon4782647954
exon4807848254
exon4834248536
exon4882049070
exon4965349695
exon5005250300
exon5103851265
exon5211852209
exon5348653714
exon5386454220
exon5453254605
exon5469655117
CDS3734637348
CDS3771037796
CDS3799338049
CDS3814038204
CDS3829938465
CDS3942039481
CDS3967339756
CDS3989740053
CDS4085840973
CDS4141241540
CDS4312043191
CDS4329143386
CDS4346543542
CDS4692547362
CDS4782647954
CDS4807848254
CDS4834248536
CDS4882049070
CDS4965349695
CDS5005250300
CDS5103851265
CDS5211852209
CDS5348653714
CDS5386454220
CDS5453254605
CDS5469654801

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000741Oxidative_phosphorylation
ATP metabolic process,
proton-transporting two-sector ATPase complex, catalytic domain,
proton transport,
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances,
proton-transporting ATPase activity, rotational mechanism,
ATP hydrolysis coupled proton transport,
Phagosome
proton-transporting V-type ATPase, V1 domain,
proton-transporting ATP synthase complex, catalytic core F(1),
ATP synthesis coupled proton transport,
hydrogen ion transporting ATP synthase activity, rotational mechanism,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13620.5CarboxypepD_reg74150
PF13620.5CarboxypepD_reg271330
PF13620.5CarboxypepD_reg9951070

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0030246carbohydrate binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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