PH01004749G0010's details annotation 1.Annotation ICBR annotation: zinc finger protein, putative, expressed
Blast result AT5G02310 : 0.00E+00 Blast annotation: proteolysis 6 2.Location Scaffold: PH01004749 Strand: + Region | Start | End | gene | 12813 | 28235 | mRNA | 12813 | 28235 | exon | 12813 | 13192 | exon | 13770 | 14858 | exon | 16236 | 17473 | exon | 17551 | 17691 | exon | 18417 | 18660 | exon | 18744 | 19508 | exon | 19824 | 20018 | exon | 20274 | 20914 | exon | 21343 | 21394 | exon | 21475 | 22120 | exon | 23438 | 23641 | exon | 25631 | 25839 | exon | 25927 | 26114 | exon | 26584 | 26688 | exon | 26786 | 26852 | exon | 26967 | 27044 | exon | 27967 | 28035 | exon | 28145 | 28235 | CDS | 13166 | 13192 | CDS | 13770 | 14858 | CDS | 16236 | 17473 | CDS | 17551 | 17691 | CDS | 18417 | 18660 | CDS | 18744 | 19508 | CDS | 19824 | 20018 | CDS | 20274 | 20914 | CDS | 21343 | 21394 | CDS | 21475 | 22120 | CDS | 23438 | 23641 | CDS | 25631 | 25839 | CDS | 25927 | 26114 | CDS | 26584 | 26688 | CDS | 26786 | 26852 | CDS | 26967 | 27044 | CDS | 27967 | 28035 | CDS | 28145 | 28219 |
UCSC genome browser 3.Network  4.Functional module Method | Module ID | Function Annotation | coexpression network | CFinderM000545 | binding, SNF2 Transcription_Regulator(from iTAK) helicase activity, ubiquitin-protein ligase activity, cellular protein modification process, TOR_signaling nucleic acid binding, TORC1_complex DNA binding, hydrolase_activity,_acting_on_acid_anhydrides RNA metabolic process, RNA_transport nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, Ubiquitin_mediated_proteolysis nucleotide binding, RNA binding, ATP binding, protein binding,
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5.Cis-elements Details in 3kb promoter region 6.Expression profilings
7.Gene family
8.Protein domain Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start | PF02207.19 | zf-UBR | 106 | 172 |
9.KEGG Pathway Pathway | KEGG Ortholog | Pathway ID | KO | null | null | null | null |
10.Gene Ontology GO Accession | GO Annotation | GO:0004842 | ubiquitin-protein ligase activity | GO:0008270 | zinc ion binding |
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