PH01004757G0080's details annotation
1.Annotation
ICBR annotation: ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
Blast result AT4G17510 : 2.90E-66
Blast annotation: ubiquitin C-terminal hydrolase 3
2.Location
Scaffold: PH01004757
Strand: -
| Region | Start | End |
| gene | 50110 | 57870 |
| mRNA | 50110 | 57870 |
| exon | 50110 | 51190 |
| exon | 51518 | 51641 |
| exon | 51923 | 51999 |
| exon | 52717 | 52793 |
| exon | 52891 | 52939 |
| exon | 53481 | 53555 |
| exon | 53650 | 53708 |
| exon | 55057 | 55162 |
| exon | 55872 | 55928 |
| exon | 56023 | 56142 |
| exon | 56253 | 57870 |
| CDS | 50909 | 51190 |
| CDS | 51518 | 51641 |
| CDS | 51923 | 51999 |
| CDS | 52717 | 52793 |
| CDS | 52891 | 52939 |
| CDS | 53481 | 53555 |
| CDS | 53650 | 53708 |
| CDS | 55057 | 55162 |
| CDS | 55872 | 55928 |
| CDS | 56023 | 56142 |
| CDS | 56253 | 56303 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001557 | RLK-Pelle_LysM (from iTAK) formate-tetrahydrofolate ligase activity, phosphotransferase activity, for other substituted phosphate groups, folic acid-containing compound biosynthetic process, phospholipid biosynthetic process, One_carbon_pool_by_folate Various_types_of_N-glycan_biosynthesis Carbon_fixation_pathways_in_prokaryotes N-Glycan_biosynthesis dolichyl-diphosphooligosaccharide-protein glycotransferase activity, NAC Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001558 | RLK-Pelle_LysM (from iTAK) retrograde vesicle-mediated transport, Golgi to ER, COPI vesicle coat, NAC Transcription_Regulator(from PlantTFDB) magnesium_ion_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01088.20 | Peptidase_C12 | 5 | 201 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004221 | ubiquitin thiolesterase activity |
| GO:0005622 | intracellular |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.