PH01004767G0020's details annotation
1.Annotation
ICBR annotation: heat shock protein DnaJ, putative, expressed
Blast result AT3G08970 : 8.00E-144
Blast annotation: DNAJ heat shock N-terminal domain-containing protein
2.Location
Scaffold: PH01004767
Strand: -
| Region | Start | End |
| gene | 6864 | 11734 |
| mRNA | 6864 | 11734 |
| exon | 6864 | 8155 |
| exon | 8274 | 8636 |
| exon | 9006 | 9347 |
| exon | 9423 | 9958 |
| exon | 10491 | 10564 |
| exon | 10675 | 10730 |
| exon | 11232 | 11734 |
| CDS | 7874 | 8155 |
| CDS | 8274 | 8636 |
| CDS | 9006 | 9347 |
| CDS | 9423 | 9958 |
| CDS | 10491 | 10564 |
| CDS | 10675 | 10730 |
| CDS | 11232 | 11324 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001246 | proteolysis, Protein_export C2H2 Transcription_Regulator(from PlantTFDB) serine-type peptidase activity, cysteine-type endopeptidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00226.30 | DnaJ | 28 | 89 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.