PH01004773G0070's details annotation
1.Annotation
ICBR annotation: ubiquitin-conjugating enzyme E2 W, putative, expressed
Blast result AT1G45050 : 9.10E-85
Blast annotation: Ubiquitin-conjugating enzyme family protein
2.Location
Scaffold: PH01004773
Strand: -
| Region | Start | End |
| gene | 35692 | 39112 |
| mRNA | 35692 | 39112 |
| exon | 35692 | 36291 |
| exon | 37011 | 37074 |
| exon | 37168 | 37270 |
| exon | 37663 | 37766 |
| exon | 37912 | 39112 |
| CDS | 36179 | 36291 |
| CDS | 37011 | 37074 |
| CDS | 37168 | 37270 |
| CDS | 37663 | 37766 |
| CDS | 37912 | 38031 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000388 | HMG Transcription_Regulator(from iTAK) cytoskeleton, regulation of actin filament polymerization, Pentose_and_glucuronate_interconversions Metabolism_of_xenobiotics_by_cytochrome_P450 acid-amino acid ligase activity, Ubiquitin_mediated_proteolysis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00179.25 | UQ_con | 49 | 184 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ubiquitin mediated proteolysis | ubiquitin-conjugating enzyme E2 W [EC:6.3.2.19] | ko04120 | K10688 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016881 | acid-amino acid ligase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.