PH01004779G0050's details annotation
1.Annotation
ICBR annotation: ZOS6-06 - C2H2 zinc finger protein, expressed
Blast result AT2G24030 : 1.40E-07
Blast annotation: zinc ion binding;nucleic acid binding
2.Location
Scaffold: PH01004779
Strand: +
| Region | Start | End |
| gene | 24099 | 28634 |
| mRNA | 24099 | 28634 |
| exon | 24099 | 26565 |
| exon | 27091 | 27249 |
| exon | 27653 | 28634 |
| CDS | 26347 | 26565 |
| CDS | 27091 | 27249 |
| CDS | 27653 | 28459 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12874.6 | zf-met | 160 | 184 |
| PF12874.6 | zf-met | 242 | 265 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.