Annotation of co-expression genes

PH01004783G0070's details annotation

1.Annotation

ICBR annotation: nucleobase-ascorbate transporter, putative, expressed

Blast result AT2G34190 : 0.00E+00
Blast annotation: Xanthine/uracil permease family protein

2.Location

Scaffold: PH01004783
Strand: +

RegionStartEnd
gene3721044325
mRNA3721044325
exon3721040359
exon4046340560
exon4098641162
exon4127341373
exon4172541800
exon4216242406
exon4249442590
exon4270542791
exon4284242946
exon4302443072
exon4319243269
exon4340043548
exon4364744325
CDS4026940359
CDS4046340560
CDS4098641162
CDS4127341373
CDS4172541800
CDS4216242406
CDS4249442590
CDS4270542791
CDS4284242946
CDS4302443072
CDS4319243269
CDS4340043548
CDS4364743859

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00860.19Xan_ur_permease31321
PF00860.19Xan_ur_permease376437

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005215transporter activity
GO:0006810transport
GO:0016020membrane
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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