PH01004795G0010's details annotation
1.Annotation
ICBR annotation: SNF2 family N-terminal domain containing protein, expressed
Blast result AT1G08060 : 2.80E-77
Blast annotation: ATP-dependent helicase family protein
2.Location
Scaffold: PH01004795
Strand: -
| Region | Start | End |
| gene | 3044 | 30204 |
| mRNA | 3044 | 30204 |
| exon | 3044 | 4008 |
| exon | 4472 | 4667 |
| exon | 4770 | 6863 |
| exon | 7842 | 8068 |
| exon | 8559 | 8613 |
| exon | 10730 | 11869 |
| exon | 11960 | 12064 |
| exon | 13020 | 13120 |
| exon | 13188 | 14154 |
| exon | 17234 | 17398 |
| exon | 17538 | 17840 |
| exon | 18431 | 18685 |
| exon | 18902 | 19027 |
| exon | 19605 | 19889 |
| exon | 19993 | 20144 |
| exon | 20249 | 20421 |
| exon | 21555 | 21697 |
| exon | 21858 | 21912 |
| exon | 22030 | 22127 |
| exon | 22552 | 22557 |
| exon | 22876 | 22880 |
| exon | 23310 | 23384 |
| exon | 29107 | 30204 |
| CDS | 3155 | 4008 |
| CDS | 4472 | 4667 |
| CDS | 4770 | 6863 |
| CDS | 7842 | 8068 |
| CDS | 8559 | 8613 |
| CDS | 10730 | 11869 |
| CDS | 11960 | 12064 |
| CDS | 13020 | 13120 |
| CDS | 13188 | 14154 |
| CDS | 17234 | 17398 |
| CDS | 17538 | 17840 |
| CDS | 18431 | 18685 |
| CDS | 18902 | 19027 |
| CDS | 19605 | 19889 |
| CDS | 19993 | 20144 |
| CDS | 20249 | 20421 |
| CDS | 21555 | 21697 |
| CDS | 21858 | 21912 |
| CDS | 22030 | 22127 |
| CDS | 22552 | 22557 |
| CDS | 22876 | 22880 |
| CDS | 23310 | 23384 |
| CDS | 29107 | 29383 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.