PH01004795G0040's details annotation
1.Annotation
ICBR annotation: ribosomal protein L37, putative
Blast result AT1G15250 : 9.10E-43
Blast annotation: Zinc-binding ribosomal protein family protein
2.Location
Scaffold: PH01004795
Strand: +
| Region | Start | End |
| gene | 53110 | 56287 |
| mRNA | 53110 | 56287 |
| exon | 53110 | 53194 |
| exon | 53295 | 53430 |
| exon | 55380 | 55481 |
| exon | 55592 | 56287 |
| CDS | 53192 | 53194 |
| CDS | 53295 | 53430 |
| CDS | 55380 | 55481 |
| CDS | 55592 | 55632 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001094 | Ribosome translation, protein methylation, structural constituent of ribosome, intracellular, methyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01907.18 | Ribosomal_L37e | 3 | 53 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L37e | ko03011 | K02922 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.