PH01004804G0080's details annotation
1.Annotation
ICBR annotation: tyrosine phosphatase family protein, putative, expressed
Blast result AT1G05000 : 1.10E-61
Blast annotation: Phosphotyrosine protein phosphatases superfamily protein
2.Location
Scaffold: PH01004804
Strand: -
| Region | Start | End |
| gene | 50017 | 54421 |
| mRNA | 50017 | 54421 |
| exon | 50017 | 50705 |
| exon | 50787 | 50830 |
| exon | 50944 | 51001 |
| exon | 53504 | 53597 |
| exon | 53693 | 54421 |
| CDS | 50478 | 50705 |
| CDS | 50787 | 50830 |
| CDS | 50944 | 51001 |
| CDS | 53504 | 53597 |
| CDS | 53693 | 53868 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03162.12 | Y_phosphatase2 | 25 | 172 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004725 | protein tyrosine phosphatase activity |
| GO:0016311 | dephosphorylation |
| GO:0016791 | phosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.