PH01004819G0030's details annotation
1.Annotation
ICBR annotation: NUC153 domain containing protein, expressed
Blast result AT3G56990 : 1.40E-59
Blast annotation: embryo sac development arrest 7
2.Location
Scaffold: PH01004819
Strand: -
| Region | Start | End |
| gene | 19420 | 32663 |
| mRNA | 19420 | 32663 |
| exon | 19420 | 19548 |
| exon | 19827 | 20417 |
| exon | 20522 | 20898 |
| exon | 20951 | 21729 |
| exon | 21876 | 21932 |
| exon | 22697 | 22879 |
| exon | 22972 | 23064 |
| exon | 23782 | 24700 |
| exon | 25109 | 25269 |
| exon | 26131 | 26199 |
| exon | 26954 | 27044 |
| exon | 27519 | 27619 |
| exon | 28603 | 28671 |
| exon | 28799 | 28874 |
| exon | 28965 | 29023 |
| exon | 29375 | 29465 |
| exon | 29968 | 30035 |
| exon | 30699 | 30790 |
| exon | 31251 | 31344 |
| exon | 32231 | 32413 |
| exon | 32508 | 32663 |
| CDS | 19520 | 19548 |
| CDS | 19827 | 20417 |
| CDS | 20522 | 20898 |
| CDS | 20951 | 21729 |
| CDS | 21876 | 21932 |
| CDS | 22697 | 22879 |
| CDS | 22972 | 23064 |
| CDS | 23782 | 24700 |
| CDS | 25109 | 25269 |
| CDS | 26131 | 26199 |
| CDS | 26954 | 27044 |
| CDS | 27519 | 27619 |
| CDS | 28603 | 28671 |
| CDS | 28799 | 28874 |
| CDS | 28965 | 29023 |
| CDS | 29375 | 29465 |
| CDS | 29968 | 30035 |
| CDS | 30699 | 30790 |
| CDS | 31251 | 31344 |
| CDS | 32231 | 32413 |
| CDS | 32508 | 32552 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08159.11 | NUC153 | 66 | 92 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.