Annotation of co-expression genes

PH01004826G0040's details annotation

1.Annotation

ICBR annotation: E2F family transcription factor protein, putative, expressed

Blast result AT2G36010 : 2.70E-87
Blast annotation: E2F transcription factor 3

2.Location

Scaffold: PH01004826
Strand: +

RegionStartEnd
gene5025559082
mRNA5025559082
exon5025552057
exon5378853977
exon5422154306
exon5437254414
exon5547355525
exon5580055888
exon5596556019
exon5615456206
exon5628256332
exon5644956497
exon5658856653
exon5674156817
exon5693357152
exon5773059082
CDS5190252057
CDS5378853977
CDS5422154306
CDS5437254414
CDS5547355525
CDS5580055888
CDS5596556019
CDS5615456206
CDS5628256332
CDS5644956497
CDS5658856653
CDS5674156817
CDS5693357152
CDS5773057837

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)E2F-DP
Transcription_Regulator(from PlantTFDB)E2F/DP

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02319.19E2F_TDP116207
PF16421.4E2F_CC-MB223322

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0005667transcription factor complex
GO:0006355regulation of transcription, DNA-dependent

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.