PH01004830G0170's details annotation
1.Annotation
ICBR annotation: mitochondrial carrier protein, putative, expressed
Blast result AT1G14560 : 6.00E-101
Blast annotation: Mitochondrial substrate carrier family protein
2.Location
Scaffold: PH01004830
Strand: -
| Region | Start | End |
| gene | 65012 | 72171 |
| mRNA | 65012 | 72171 |
| exon | 65012 | 65578 |
| exon | 65905 | 66036 |
| exon | 66125 | 66309 |
| exon | 68069 | 68198 |
| exon | 68397 | 68607 |
| exon | 68691 | 68776 |
| exon | 68879 | 69060 |
| exon | 70847 | 72171 |
| CDS | 65525 | 65578 |
| CDS | 65905 | 66036 |
| CDS | 66125 | 66309 |
| CDS | 68069 | 68198 |
| CDS | 68397 | 68607 |
| CDS | 68691 | 68776 |
| CDS | 68879 | 69060 |
| CDS | 70847 | 71021 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00153.26 | Mito_carr | 90 | 178 |
| PF00153.26 | Mito_carr | 186 | 285 |
| PF00153.26 | Mito_carr | 293 | 380 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.