PH01004831G0060's details annotation
1.Annotation
ICBR annotation: octicosapeptide/Phox/Bem1p, putative, expressed
Blast result AT2G25290 : 1.00E-167
Blast annotation: Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
2.Location
Scaffold: PH01004831
Strand: -
| Region | Start | End |
| gene | 64827 | 71431 |
| mRNA | 64827 | 71431 |
| exon | 64827 | 64972 |
| exon | 65752 | 65833 |
| exon | 66945 | 67007 |
| exon | 67725 | 67789 |
| exon | 67923 | 68030 |
| exon | 68355 | 71431 |
| CDS | 64869 | 64972 |
| CDS | 65752 | 65833 |
| CDS | 66945 | 67007 |
| CDS | 67725 | 67789 |
| CDS | 67923 | 68030 |
| CDS | 68355 | 70521 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000053 | CMGC_DYRK-PRP4 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00564.23 | PB1 | 320 | 395 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.