Annotation of co-expression genes

PH01004842G0030's details annotation

1.Annotation

ICBR annotation: selT-like protein precursor, putative, expressed

Blast result AT3G47300 : 3.60E-46
Blast annotation: SELT-like protein precursor

2.Location

Scaffold: PH01004842
Strand: +

RegionStartEnd
gene2315529720
mRNA2315529720
exon2315523632
exon2594926019
exon2638226449
exon2730127469
exon2761827699
exon2827828593
exon2889729720
CDS2356523632
CDS2594926019
CDS2638226449
CDS2730127469
CDS2761827699
CDS2827828593
CDS2889729013

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000191TALE Transcription_Regulator(from PlantTFDB)
HB-KNOX Transcription_Regulator(from iTAK)
regulation of transcription, DNA-dependent,
HB-BELL Transcription_Regulator(from iTAK)
protein complex,
nucleus,
microtubule,
AUX/IAA Transcription_Regulator(from iTAK)
Phagosome
selenium binding,
sequence-specific DNA binding,
structural constituent of cytoskeleton,
sequence-specific DNA binding transcription factor activity,
trehalose biosynthetic process,
microtubule-based process,
protein polymerization,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF10262.8Rdx155278

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0008430selenium binding
GO:0045454cell redox homeostasis

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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