PH01004843G0030's details annotation
1.Annotation
ICBR annotation: importin subunit beta, putative, expressed
Blast result AT3G08960 : 0.00E+00
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01004843
Strand: +
| Region | Start | End |
| gene | 14088 | 28119 |
| mRNA | 14088 | 28119 |
| exon | 14088 | 14488 |
| exon | 14636 | 14745 |
| exon | 15270 | 15342 |
| exon | 15439 | 15500 |
| exon | 15590 | 15731 |
| exon | 16145 | 16363 |
| exon | 16477 | 16543 |
| exon | 17524 | 17929 |
| exon | 18302 | 18398 |
| exon | 18567 | 18670 |
| exon | 20011 | 20158 |
| exon | 20246 | 20406 |
| exon | 20834 | 20933 |
| exon | 21046 | 21120 |
| exon | 21215 | 21349 |
| exon | 21656 | 21748 |
| exon | 22055 | 22150 |
| exon | 22234 | 22338 |
| exon | 23228 | 23362 |
| exon | 23686 | 23736 |
| exon | 23983 | 24165 |
| exon | 25403 | 25561 |
| exon | 25959 | 26018 |
| exon | 26125 | 26346 |
| exon | 26775 | 26881 |
| exon | 27131 | 27215 |
| exon | 27294 | 28119 |
| CDS | 14348 | 14488 |
| CDS | 14636 | 14745 |
| CDS | 15270 | 15342 |
| CDS | 15439 | 15500 |
| CDS | 15590 | 15731 |
| CDS | 16145 | 16363 |
| CDS | 16477 | 16543 |
| CDS | 17524 | 17929 |
| CDS | 18302 | 18398 |
| CDS | 18567 | 18670 |
| CDS | 20011 | 20158 |
| CDS | 20246 | 20406 |
| CDS | 20834 | 20933 |
| CDS | 21046 | 21120 |
| CDS | 21215 | 21349 |
| CDS | 21656 | 21748 |
| CDS | 22055 | 22150 |
| CDS | 22234 | 22338 |
| CDS | 23228 | 23362 |
| CDS | 23686 | 23736 |
| CDS | 23983 | 24165 |
| CDS | 25403 | 25561 |
| CDS | 25959 | 26018 |
| CDS | 26125 | 26346 |
| CDS | 26775 | 26881 |
| CDS | 27131 | 27215 |
| CDS | 27294 | 27458 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03810.18 | IBN_N | 29 | 101 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
| GO:0005643 | nuclear pore |
| GO:0006886 | intracellular protein transport |
| GO:0008565 | protein transporter activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.