PH01004843G0080's details annotation
1.Annotation
ICBR annotation: PHD finger family protein, putative, expressed
Blast result AT5G63900 : 2.90E-41
Blast annotation: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain
2.Location
Scaffold: PH01004843
Strand: -
| Region | Start | End |
| gene | 65770 | 69037 |
| mRNA | 65770 | 69037 |
| exon | 65770 | 67021 |
| exon | 67120 | 67219 |
| exon | 67341 | 67427 |
| exon | 67516 | 67754 |
| exon | 67859 | 67944 |
| exon | 68078 | 68153 |
| exon | 68432 | 69037 |
| CDS | 66830 | 67021 |
| CDS | 67120 | 67219 |
| CDS | 67341 | 67427 |
| CDS | 67516 | 67754 |
| CDS | 67859 | 67944 |
| CDS | 68078 | 68153 |
| CDS | 68432 | 68515 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001409 | Whirly Transcription_Regulator(from PlantTFDB) Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis phosphatidylinositol N-acetylglucosaminyltransferase activity, GPI anchor biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.