PH01004854G0090's details annotation
1.Annotation
ICBR annotation: indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
Blast result AT4G02610 : 4.90E-57
Blast annotation: Aldolase-type TIM barrel family protein
2.Location
Scaffold: PH01004854
Strand: +
| Region | Start | End |
| gene | 47049 | 51908 |
| mRNA | 47049 | 51908 |
| exon | 47049 | 47820 |
| exon | 47921 | 48067 |
| exon | 48149 | 48323 |
| exon | 48402 | 48478 |
| exon | 51353 | 51908 |
| CDS | 47632 | 47820 |
| CDS | 47921 | 48067 |
| CDS | 48149 | 48323 |
| CDS | 48402 | 48478 |
| CDS | 51353 | 51490 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00290.19 | Trp_syntA | 55 | 199 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004834 | tryptophan synthase activity |
| GO:0006568 | tryptophan metabolic process |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.