PH01004857G0050's details annotation
1.Annotation
ICBR annotation: zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Blast result AT2G20280 : 3.00E-128
Blast annotation: Zinc finger C-x8-C-x5-C-x3-H type family protein
2.Location
Scaffold: PH01004857
Strand: +
| Region | Start | End |
| gene | 20863 | 25558 |
| mRNA | 20863 | 25558 |
| exon | 20863 | 21538 |
| exon | 21612 | 21696 |
| exon | 22185 | 22379 |
| exon | 22470 | 22558 |
| exon | 23718 | 23906 |
| exon | 24037 | 24167 |
| exon | 24244 | 24346 |
| exon | 25299 | 25558 |
| CDS | 21335 | 21538 |
| CDS | 21612 | 21696 |
| CDS | 22185 | 22379 |
| CDS | 22470 | 22558 |
| CDS | 23718 | 23906 |
| CDS | 24037 | 24167 |
| CDS | 24244 | 24346 |
| CDS | 25299 | 25484 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C3H |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16543.4 | DFRP_C | 244 | 323 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.