PH01004868G0120's details annotation 1.Annotation ICBR annotation: homeobox and START domains containing protein, putative, expressed
Blast result AT5G46880 : 1.80E-54 Blast annotation: homeobox-7 2.Location Scaffold: PH01004868 Strand: + Region | Start | End | gene | 57981 | 59990 | mRNA | 57981 | 59990 | exon | 57981 | 58425 | exon | 58540 | 58657 | exon | 58781 | 58969 | exon | 59280 | 59645 | exon | 59686 | 59990 | CDS | 58217 | 58425 | CDS | 58540 | 58657 | CDS | 58781 | 58969 | CDS | 59280 | 59645 | CDS | 59686 | 59883 |
UCSC genome browser 3.Network  4.Functional module Method | Module ID | Function Annotation | coexpression network | CFinderM000056 | HD-ZIP Transcription_Regulator(from PlantTFDB) HB-HD-ZIP Transcription_Regulator(from iTAK) Biosynthesis_of_unsaturated_fatty_acids Fatty_acid_biosynthesis nucleus, transition metal ion binding, acyl-[acyl-carrier-protein] desaturase activity, fatty acid metabolic process, lipid biosynthetic process, sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity, fatty acid biosynthetic process, YABBY Transcription_Regulator(from PlantTFDB) C2C2-YABBY Transcription_Regulator(from iTAK) lipase activity, Rho GDP-dissociation inhibitor activity,
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5.Cis-elements Details in 3kb promoter region 6.Expression profilings
7.Gene family Category | Family | Transcription_Regulator(from iTAK) | HB-other | Transcription_Regulator(from PlantTFDB) | HB-other |
8.Protein domain Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start | PF00046.28 | Homeobox | 54 | 109 |
9.KEGG Pathway Pathway | KEGG Ortholog | Pathway ID | KO | null | null | null | null |
10.Gene Ontology GO Accession | GO Annotation | GO:0003677 | DNA binding | GO:0003700 | sequence-specific DNA binding transcription factor activity | GO:0005634 | nucleus | GO:0006355 | regulation of transcription, DNA-dependent | GO:0043565 | sequence-specific DNA binding |
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