PH01004875G0020's details annotation
1.Annotation
ICBR annotation: exostosin, putative, expressed
Blast result AT5G04500 : 3.40E-83
Blast annotation: glycosyltransferase family protein 47
2.Location
Scaffold: PH01004875
Strand: +
| Region | Start | End |
| gene | 12288 | 15834 |
| mRNA | 12288 | 15834 |
| exon | 12288 | 12623 |
| exon | 12710 | 12741 |
| exon | 12831 | 12953 |
| exon | 13379 | 13546 |
| exon | 13656 | 13742 |
| exon | 13991 | 14117 |
| exon | 14660 | 15834 |
| CDS | 12503 | 12623 |
| CDS | 12710 | 12741 |
| CDS | 12831 | 12953 |
| CDS | 13379 | 13546 |
| CDS | 13656 | 13742 |
| CDS | 13991 | 14117 |
| CDS | 14660 | 15417 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000113 | RLK-Pelle_LRR-Xa (from iTAK) intrinsic to endoplasmic reticulum membrane, ADP_binding |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09258.9 | Glyco_transf_64 | 232 | 461 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016758 | transferase activity, transferring hexosyl groups |
| GO:0031227 | intrinsic to endoplasmic reticulum membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.