PH01004903G0030's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G50350 : 1.10E-30
Blast annotation: -
2.Location
Scaffold: PH01004903
Strand: -
| Region | Start | End |
| gene | 19089 | 22759 |
| mRNA | 19089 | 22759 |
| exon | 19089 | 20220 |
| exon | 20412 | 20699 |
| exon | 20791 | 20931 |
| exon | 21032 | 21136 |
| exon | 21993 | 22091 |
| exon | 22184 | 22759 |
| CDS | 19936 | 20220 |
| CDS | 20412 | 20699 |
| CDS | 20791 | 20931 |
| CDS | 21032 | 21136 |
| CDS | 21993 | 22091 |
| CDS | 22184 | 22333 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000837 | glutamyl-tRNA aminoacylation, guanosine tetraphosphate metabolic process, tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis Porphyrin_and_chlorophyll_metabolism glutamate-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, tRNA binding, tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.