Annotation of co-expression genes

PH01004904G0030's details annotation

1.Annotation

ICBR annotation: WD-40 repeat family protein, putative, expressed

Blast result AT1G64610 : 1.00E-103
Blast annotation: Transducin/WD40 repeat-like superfamily protein

2.Location

Scaffold: PH01004904
Strand: +

RegionStartEnd
gene1250119816
mRNA1250119816
exon1250114568
exon1552915695
exon1653117722
exon1788317973
exon1814618303
exon1837818429
exon1853818617
exon1873818831
exon1894019816
CDS1445814568
CDS1552915695
CDS1653117722
CDS1788317973
CDS1814618303
CDS1837818429
CDS1853818617
CDS1873818831
CDS1894019439

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000726RLK-Pelle_DLSV (from iTAK)
RLK-Pelle_LRR-VI-2 (from iTAK)
Nin-like Transcription_Regulator(from PlantTFDB)
RWP-RK Transcription_Regulator(from iTAK)
protein phosphorylation,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00400.31WD40386417
PF00400.31WD40469505
PF00400.31WD40515547

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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