Annotation of co-expression genes

PH01004929G0060's details annotation

1.Annotation

ICBR annotation: OsSub38 - Putative Subtilisin homologue, expressed

Blast result AT4G10520 : 3.40E-76
Blast annotation: Subtilase family protein

2.Location

Scaffold: PH01004929
Strand: -

RegionStartEnd
gene5723871194
mRNA5723871194
exon5723857351
exon5775357811
exon5883058959
exon5914859411
exon5951559585
exon5968460294
exon6110561276
exon6165261778
exon6196862231
exon6237562445
exon6252562592
exon6273763138
exon6396764122
exon6519365286
exon6677566821
exon6764067817
exon6881368909
exon7086770958
exon7103371194
CDS5727957351
CDS5775357811
CDS5883058959
CDS5914859411
CDS5951559585
CDS5968460294
CDS6110561276
CDS6165261778
CDS6196862231
CDS6237562445
CDS6252562592
CDS6273763138
CDS6396764122
CDS6519365286
CDS6677566821
CDS6764067817
CDS6881368909
CDS7086770958
CDS7103371143

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000136CPP Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05922.15Inhibitor_I9176222
PF00082.21Peptidase_S8248367
PF00082.21Peptidase_S8538627
PF00082.21Peptidase_S8683977

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004252serine-type endopeptidase activity
GO:0006508proteolysis
GO:0042802identical protein binding
GO:0043086negative regulation of catalytic activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.