PH01004935G0010's details annotation
1.Annotation
ICBR annotation: abscisic acid insensitive 8, putative, expressed
Blast result AT3G08550 : 2.00E-117
Blast annotation: elongation defective 1 protein / ELD1 protein
2.Location
Scaffold: PH01004935
Strand: -
| Region | Start | End |
| gene | 133 | 5515 |
| mRNA | 133 | 5515 |
| exon | 133 | 839 |
| exon | 925 | 1012 |
| exon | 1503 | 1549 |
| exon | 3125 | 3266 |
| exon | 3676 | 3863 |
| exon | 5172 | 5216 |
| exon | 5300 | 5515 |
| CDS | 558 | 839 |
| CDS | 925 | 1012 |
| CDS | 1503 | 1549 |
| CDS | 3125 | 3266 |
| CDS | 3676 | 3863 |
| CDS | 5172 | 5216 |
| CDS | 5300 | 5413 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001203 | SNARE_interactions_in_vesicular_transport ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM001615 | Alanine,_aspartate_and_glutamate_metabolism Nitrogen_metabolism 1,3-beta-D-glucan synthase activity, 1,3-beta-D-glucan synthase complex, exocyst, (1->3)-beta-D-glucan biosynthetic process, exocytosis, cellular amino acid metabolic process, Arginine_and_proline_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.