PH01004943G0040's details annotation
1.Annotation
ICBR annotation: pectinesterase, putative, expressed
Blast result AT5G19730 : 2.30E-82
Blast annotation: Pectin lyase-like superfamily protein
2.Location
Scaffold: PH01004943
Strand: -
| Region | Start | End |
| gene | 16597 | 19063 |
| mRNA | 16597 | 19063 |
| exon | 16597 | 16658 |
| exon | 17056 | 17262 |
| exon | 17359 | 17548 |
| exon | 17695 | 19063 |
| CDS | 16644 | 16658 |
| CDS | 17056 | 17262 |
| CDS | 17359 | 17548 |
| CDS | 17695 | 18083 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01095.18 | Pectinesterase | 98 | 260 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.