PH01004966G0100's details annotation
1.Annotation
ICBR annotation: mannose-1-phosphate guanyltransferase, putative, expressed
Blast result AT2G39770 : 0
Blast annotation: Glucose-1-phosphate adenylyltransferase family protein
2.Location
Scaffold: PH01004966
Strand: +
| Region | Start | End |
| gene | 59502 | 63025 |
| mRNA | 59502 | 63025 |
| exon | 59502 | 61126 |
| exon | 61632 | 62036 |
| exon | 62119 | 63025 |
| CDS | 61016 | 61126 |
| CDS | 61632 | 62036 |
| CDS | 62119 | 62790 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000700 | GH63 Glycoside_Hydrolases RLK-Pelle_RLCK-XIII (from iTAK) oligosaccharide metabolic process, ubiquinone biosynthetic process, tRNA methylation, tRNA (guanine-N1-)-methyltransferase activity, mannosyl-oligosaccharide glucosidase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, monooxygenase activity, |
| coexpression network | CFinderM000938 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, binding, mRNA_surveillance_pathway hydrogen ion transmembrane transporter activity, ATP hydrolysis coupled proton transport, TORC1_complex Phagosome Oxidative_phosphorylation phosphotransferase activity, alcohol group as acceptor, TOR_signaling rRNA_catabolic_process |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00483.22 | NTP_transferase | 2 | 263 |
| PF00132.23 | Hexapep | 295 | 329 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Fructose and mannose metabolism | mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] | ko00051 | K00966 |
| Amino sugar and nucleotide sugar metabolism | mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] | ko00520 | K00966 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009058 | biosynthetic process |
| GO:0016779 | nucleotidyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.