PH01004968G0060's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G33500 : 1.20E-69
Blast annotation: Protein phosphatase 2C family protein
2.Location
Scaffold: PH01004968
Strand: -
| Region | Start | End |
| gene | 25529 | 31503 |
| mRNA | 25529 | 31503 |
| exon | 25529 | 26040 |
| exon | 26119 | 26247 |
| exon | 26338 | 26481 |
| exon | 26571 | 26740 |
| exon | 28325 | 28412 |
| exon | 28548 | 28617 |
| exon | 28826 | 28965 |
| exon | 29890 | 30566 |
| exon | 30676 | 31503 |
| CDS | 25873 | 26040 |
| CDS | 26119 | 26247 |
| CDS | 26338 | 26481 |
| CDS | 26571 | 26740 |
| CDS | 28325 | 28412 |
| CDS | 28548 | 28617 |
| CDS | 28826 | 28965 |
| CDS | 29890 | 30566 |
| CDS | 30676 | 30847 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000629 | RLK-Pelle_LRR-XIV (from iTAK) AUX/IAA Transcription_Regulator(from iTAK) transcription factor TFIID complex, Drug_metabolism_-_cytochrome_P450 Metabolism_of_xenobiotics_by_cytochrome_P450 Basal_transcription_factors |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07228.11 | SpoIIE | 369 | 577 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.