PH01004976G0010's details annotation
1.Annotation
ICBR annotation: mitochondrial carrier protein, putative, expressed
Blast result AT2G47490 : 2.00E-108
Blast annotation: NAD+ transporter 1
2.Location
Scaffold: PH01004976
Strand: +
| Region | Start | End |
| gene | 3282 | 7366 |
| mRNA | 3282 | 7366 |
| exon | 3282 | 3603 |
| exon | 3705 | 3800 |
| exon | 4988 | 5094 |
| exon | 5315 | 5363 |
| exon | 5464 | 5549 |
| exon | 5912 | 6006 |
| exon | 6102 | 6190 |
| exon | 6313 | 6407 |
| exon | 6547 | 7366 |
| CDS | 3480 | 3603 |
| CDS | 3705 | 3800 |
| CDS | 4988 | 5094 |
| CDS | 5315 | 5363 |
| CDS | 5464 | 5549 |
| CDS | 5912 | 6006 |
| CDS | 6102 | 6190 |
| CDS | 6313 | 6407 |
| CDS | 6547 | 6795 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001163 | CAMK_CDPK (from iTAK) guanyl-nucleotide exchange factor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00153.26 | Mito_carr | 31 | 124 |
| PF00153.26 | Mito_carr | 126 | 214 |
| PF00153.26 | Mito_carr | 224 | 313 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.