Annotation of co-expression genes

PH01004976G0080's details annotation

1.Annotation

ICBR annotation: acyltransferase, putative, expressed

Blast result AT1G80950 : 3.00E-119
Blast annotation: Phospholipid/glycerol acyltransferase family protein

2.Location

Scaffold: PH01004976
Strand: -

RegionStartEnd
gene5212759174
mRNA5212759174
exon5212752357
exon5249052630
exon5324453377
exon5521255276
exon5541755454
exon5557755696
exon5725459174
CDS5225352357
CDS5249052630
CDS5324453377
CDS5521255276
CDS5541755454
CDS5557755696
CDS5725457562

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01553.20Acyltransferase176291

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycerophospholipid metabolismlysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase[EC:2.3.1.23;EC:2.3.1.67]ko00564K13510
Ether lipid metabolismlysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase[EC:2.3.1.23;EC:2.3.1.67]ko00565K13510

10.Gene Ontology

GO AccessionGO Annotation
GO:0008152metabolic process
GO:0016746transferase activity, transferring acyl groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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