Annotation of co-expression genes

PH01005012G0050's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT5G18420 : 2.10E-99
Blast annotation: -

2.Location

Scaffold: PH01005012
Strand: -

RegionStartEnd
gene2510132960
mRNA2510132960
exon2510125256
exon2611126304
exon2738427454
exon2776827821
exon2895532118
exon3221232960
CDS2514325256
CDS2611126304
CDS2738427454
CDS2776827821
CDS2895532118
CDS3221232469

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000231NAD biosynthetic process,
nucleotide-excision repair,
protein folding,
histone_lysine_methylation
coexpression networkCFinderM000633Aminoacyl-tRNA_biosynthesis
histone_lysine_methylation

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05033.15Pre-SET575654
PF10155.8DUF23639471049
PF01061.23ABC2_membrane10811141

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005634nucleus
GO:0008270zinc ion binding
GO:0016020membrane
GO:0018024histone-lysine N-methyltransferase activity
GO:0034968histone lysine methylation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.