PH01005035G0060's details annotation
1.Annotation
ICBR annotation: shwachman-Bodian-Diamond syndrome protein, putative, expressed
Blast result AT1G43860 : 1.60E-51
Blast annotation: sequence-specific DNA binding transcription factors
2.Location
Scaffold: PH01005035
Strand: -
| Region | Start | End |
| gene | 29944 | 32222 |
| mRNA | 29944 | 32222 |
| exon | 29944 | 30917 |
| exon | 31322 | 31489 |
| exon | 32094 | 32222 |
| CDS | 30471 | 30917 |
| CDS | 31322 | 31489 |
| CDS | 32094 | 32165 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000924 | Ribosome_biogenesis_in_eukaryotes Protein_export omega_peptidase_activity ribosome biogenesis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09377.9 | SBDS_C | 23 | 95 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome biogenesis in eukaryotes | ribosome maturation protein SDO1 | ko03008 | K14574 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0042254 | ribosome biogenesis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.