Annotation of co-expression genes

PH01005076G0020's details annotation

1.Annotation

ICBR annotation: serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed

Blast result AT4G13930 : 0.00E+00
Blast annotation: serine hydroxymethyltransferase 4

2.Location

Scaffold: PH01005076
Strand: +

RegionStartEnd
gene1453816012
mRNA1453816012
exon1453814937
exon1513915294
exon1596616012
CDS1477914937
CDS1513915294
CDS1596615980

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00464.18SHMT13411

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glyoxylate and dicarboxylate metabolismglycine hydroxymethyltransferase [EC:2.1.2.1]ko00630K00600
Methane metabolismglycine hydroxymethyltransferase [EC:2.1.2.1]ko00680K00600
273 Glycine, serine and threonine metabolismglycine hydroxymethyltransferase [EC:2.1.2.1]K00600
Cyanoamino acid metabolismglycine hydroxymethyltransferase [EC:2.1.2.1]ko00460K00600
One carbon pool by folateglycine hydroxymethyltransferase [EC:2.1.2.1]ko00670K00600

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004372glycine hydroxymethyltransferase activity
GO:0006544glycine metabolic process
GO:0006563L-serine metabolic process
GO:0030170pyridoxal phosphate binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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