Annotation of co-expression genes

PH01005099G0030's details annotation

1.Annotation

ICBR annotation: glycosyl hydrolase family protein 27, putative, expressed

Blast result AT3G26380 : 2.50E-70
Blast annotation: Melibiase family protein

2.Location

Scaffold: PH01005099
Strand: +

RegionStartEnd
gene2522131946
mRNA2522131946
exon2522125745
exon2588925974
exon2658426728
exon2684026996
exon2813128192
exon2828728450
exon2858228699
exon2952129655
exon2973429984
exon3005530214
exon3057831946
CDS2569525745
CDS2588925974
CDS2658426728
CDS2684026996
CDS2813128192
CDS2828728450
CDS2858228699
CDS2952129655
CDS2973429984
CDS3005530214
CDS3057830646

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000387double-strand break repair,
DNA metabolic process,
endoplasmic reticulum,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF16499.4Melibiase_2160298

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.