PH01005107G0060's details annotation
1.Annotation
ICBR annotation: DnaK family protein, putative, expressed
Blast result AT1G11660 : 2.00E-107
Blast annotation: heat shock protein 70 (Hsp 70) family protein
2.Location
Scaffold: PH01005107
Strand: +
| Region | Start | End |
| gene | 38901 | 46608 |
| mRNA | 38901 | 46608 |
| exon | 38901 | 39524 |
| exon | 39695 | 40417 |
| exon | 40529 | 40741 |
| exon | 42301 | 42659 |
| exon | 42972 | 43116 |
| exon | 44958 | 45050 |
| exon | 45134 | 45202 |
| exon | 45649 | 45849 |
| exon | 45951 | 46608 |
| CDS | 39276 | 39524 |
| CDS | 39695 | 40417 |
| CDS | 40529 | 40741 |
| CDS | 42301 | 42659 |
| CDS | 42972 | 43116 |
| CDS | 44958 | 45050 |
| CDS | 45134 | 45202 |
| CDS | 45649 | 45849 |
| CDS | 45951 | 46139 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00012.19 | HSP70 | 3 | 69 |
| PF00012.19 | HSP70 | 82 | 396 |
| PF00012.19 | HSP70 | 571 | 737 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0015074 | DNA integration |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.