PH01005127G0050's details annotation
1.Annotation
ICBR annotation: DNA repair helicase XPB2, putative, expressed
Blast result AT5G41370 : 1.00E-172
Blast annotation: homolog of xeroderma pigmentosum complementation group B 1
2.Location
Scaffold: PH01005127
Strand: -
| Region | Start | End |
| gene | 23316 | 31186 |
| mRNA | 23316 | 31186 |
| exon | 23316 | 23842 |
| exon | 23927 | 24037 |
| exon | 24473 | 24544 |
| exon | 24675 | 24770 |
| exon | 25389 | 25582 |
| exon | 25665 | 25740 |
| exon | 25845 | 26042 |
| exon | 26126 | 26182 |
| exon | 28168 | 28248 |
| exon | 28339 | 28482 |
| exon | 28882 | 28938 |
| exon | 29072 | 29240 |
| exon | 30344 | 30512 |
| exon | 30693 | 30809 |
| exon | 30885 | 31186 |
| CDS | 23783 | 23842 |
| CDS | 23927 | 24037 |
| CDS | 24473 | 24544 |
| CDS | 24675 | 24770 |
| CDS | 25389 | 25582 |
| CDS | 25665 | 25740 |
| CDS | 25845 | 26042 |
| CDS | 26126 | 26182 |
| CDS | 28168 | 28248 |
| CDS | 28339 | 28482 |
| CDS | 28882 | 28938 |
| CDS | 29072 | 29240 |
| CDS | 30344 | 30512 |
| CDS | 30693 | 30809 |
| CDS | 30885 | 30900 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13625.5 | Helicase_C_3 | 68 | 158 |
| PF04851.14 | ResIII | 286 | 364 |
| PF16203.4 | ERCC3_RAD25_C | 390 | 435 |
| PF00149.27 | Metallophos | 485 | 531 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005524 | ATP binding |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.