Annotation of co-expression genes

PH01005184G0030's details annotation

1.Annotation

ICBR annotation: multidrug resistance protein, putative, expressed

Blast result AT4G25960 : 0.00E+00
Blast annotation: P-glycoprotein 2

2.Location

Scaffold: PH01005184
Strand: +

RegionStartEnd
gene2433234023
mRNA2433234023
exon2433224759
exon2486624920
exon2504825223
exon2914229602
exon2968630612
exon3069831358
exon3167531922
exon3200332415
exon3251634023
CDS2446624759
CDS2486624920
CDS2504825223
CDS2914229602
CDS2968630612
CDS3069831358
CDS3167531922
CDS3200332415
CDS3251633078

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00664.22ABC_membrane60326
PF00005.26ABC_tran396545
PF00664.22ABC_membrane699969
PF00005.26ABC_tran10351183

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
ABC transportersATP-binding cassette, subfamily B (MDR/TAP), member 1ko02010K05658

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0006810transport
GO:0016021integral to membrane
GO:0016887ATPase activity
GO:0017111nucleoside-triphosphatase activity
GO:0042626ATPase activity, coupled to transmembrane movement of substances
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.