Annotation of co-expression genes

PH01005189G0080's details annotation

1.Annotation

ICBR annotation: tyrosine protein kinase domain containing protein, putative, expressed

Blast result AT5G54590 : 3.00E-149
Blast annotation: Protein kinase superfamily protein

2.Location

Scaffold: PH01005189
Strand: -

RegionStartEnd
gene3653541318
mRNA3653541318
exon3653536883
exon3698137184
exon3775437825
exon3791037995
exon3854238668
exon3875338906
exon4025140268
exon4035341318
CDS3654536883
CDS3698137184
CDS3775437825
CDS3791037995
CDS3854238668
CDS3875338906
CDS4025140268
CDS4035340675

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000168RLK-Pelle_LRR-III (from iTAK)
protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
RLK-Pelle_LRR-I-2 (from iTAK)
ATP binding,
identical protein binding,
negative regulation of catalytic activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07714.16Pkinase_Tyr124383

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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