PH01005239G0070's details annotation
1.Annotation
ICBR annotation: AP2 domain containing protein, expressed
Blast result AT4G36920 : 3.10E-56
Blast annotation: Integrase-type DNA-binding superfamily protein
2.Location
Scaffold: PH01005239
Strand: -
| Region | Start | End |
| gene | 47769 | 53679 |
| mRNA | 47769 | 53679 |
| exon | 47769 | 49157 |
| exon | 49404 | 49576 |
| exon | 49663 | 49754 |
| exon | 49857 | 49901 |
| exon | 50037 | 50182 |
| exon | 50273 | 50357 |
| exon | 50481 | 50511 |
| exon | 50664 | 50689 |
| exon | 50939 | 50998 |
| exon | 51173 | 53679 |
| CDS | 48849 | 49157 |
| CDS | 49404 | 49576 |
| CDS | 49663 | 49754 |
| CDS | 49857 | 49901 |
| CDS | 50037 | 50182 |
| CDS | 50273 | 50357 |
| CDS | 50481 | 50511 |
| CDS | 50664 | 50689 |
| CDS | 50939 | 50998 |
| CDS | 51173 | 51315 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | AP2/ERF-ERF |
| Transcription_Regulator(from PlantTFDB) | AP2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00847.19 | AP2 | 100 | 149 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.