PH01005264G0050's details annotation
1.Annotation
ICBR annotation: reticulon domain containing protein, putative, expressed
Blast result AT4G23630 : 7.10E-66
Blast annotation: VIRB2-interacting protein 1
2.Location
Scaffold: PH01005264
Strand: -
| Region | Start | End |
| gene | 24293 | 27379 |
| mRNA | 24293 | 27379 |
| exon | 24293 | 25480 |
| exon | 25632 | 25641 |
| exon | 25747 | 25888 |
| exon | 26411 | 26591 |
| exon | 27090 | 27379 |
| CDS | 25314 | 25480 |
| CDS | 25632 | 25641 |
| CDS | 25747 | 25888 |
| CDS | 26411 | 26591 |
| CDS | 27090 | 27288 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02453.16 | Reticulon | 68 | 183 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005783 | endoplasmic reticulum |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.