PH01005277G0080's details annotation
1.Annotation
ICBR annotation: pentatricopeptide repeat domain containing protein, putative
Blast result AT1G09190 : 1.20E-73
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01005277
Strand: +
| Region | Start | End |
| gene | 47119 | 53829 |
| mRNA | 47119 | 53829 |
| exon | 47119 | 49212 |
| exon | 49341 | 49414 |
| exon | 50212 | 50603 |
| exon | 51052 | 52049 |
| exon | 52609 | 53829 |
| CDS | 48298 | 49212 |
| CDS | 49341 | 49414 |
| CDS | 50212 | 50603 |
| CDS | 51052 | 52049 |
| CDS | 52609 | 53364 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000204 | CMGC_CLK (from iTAK) histone deacetylation, ubiquitin ligase complex, histone deacetylase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13041.5 | PPR_2 | 6 | 36 |
| PF01535.19 | PPR | 45 | 74 |
| PF13041.5 | PPR_2 | 146 | 192 |
| PF01535.19 | PPR | 220 | 245 |
| PF08284.10 | RVP_2 | 527 | 616 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.