PH01005298G0040's details annotation
1.Annotation
ICBR annotation: histone-like transcription factor and archaeal histone, putative
Blast result AT5G43250 : 1.20E-21
Blast annotation: nuclear factor Y, subunit C13
2.Location
Scaffold: PH01005298
Strand: +
| Region | Start | End |
| gene | 19380 | 20962 |
| mRNA | 19380 | 20962 |
| exon | 19380 | 20962 |
| CDS | 19608 | 20087 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000106 | PL1 Polysaccharide_Lyases NF-YC Transcription_Regulator(from PlantTFDB) ribonucleoprotein complex, nucleolus, cellulose biosynthetic process, ribosome biogenesis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | NF-YC |
| Transcription_Regulator(from PlantTFDB) | NF-YC |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00808.22 | CBFD_NFYB_HMF | 43 | 104 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005622 | intracellular |
| GO:0043565 | sequence-specific DNA binding |
| GO:0046982 | protein heterodimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.