PH01005325G0010's details annotation
1.Annotation
ICBR annotation: protein kinase domain containing protein, expressed
Blast result AT4G02630 : 3.00E-148
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01005325
Strand: +
| Region | Start | End |
| gene | 1178 | 5198 |
| mRNA | 1178 | 5198 |
| exon | 1178 | 1945 |
| exon | 2278 | 2382 |
| exon | 2481 | 2603 |
| exon | 2684 | 2854 |
| exon | 2935 | 3064 |
| exon | 3152 | 3361 |
| exon | 3405 | 5198 |
| CDS | 1178 | 1945 |
| CDS | 2278 | 2382 |
| CDS | 2481 | 2603 |
| CDS | 2684 | 2854 |
| CDS | 2935 | 3064 |
| CDS | 3152 | 3361 |
| CDS | 3405 | 3428 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001784 | RLK-Pelle_RLCK-V (from iTAK) COPI vesicle coat, membrane coat, Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 222 | 489 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.