PH01005352G0040's details annotation
1.Annotation
ICBR annotation: rhodanese-like domain containing protein, putative, expressed
Blast result AT1G79230 : 1.70E-98
Blast annotation: mercaptopyruvate sulfurtransferase 1
2.Location
Scaffold: PH01005352
Strand: -
| Region | Start | End |
| gene | 14340 | 18242 |
| mRNA | 14340 | 18242 |
| exon | 14340 | 14525 |
| exon | 14602 | 14669 |
| exon | 14937 | 15000 |
| exon | 15088 | 15169 |
| exon | 15556 | 15614 |
| exon | 15989 | 16151 |
| exon | 16685 | 16809 |
| exon | 17244 | 17303 |
| exon | 17584 | 18242 |
| CDS | 14415 | 14525 |
| CDS | 14602 | 14669 |
| CDS | 14937 | 15000 |
| CDS | 15088 | 15169 |
| CDS | 15556 | 15614 |
| CDS | 15989 | 16151 |
| CDS | 16685 | 16809 |
| CDS | 17244 | 17303 |
| CDS | 17584 | 17652 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000969 | Sulfur_relay_system Cysteine_and_methionine_metabolism Phosphatidylinositol_signaling_system Glycerophospholipid_metabolism cysteine-type endopeptidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00581.19 | Rhodanese | 9 | 107 |
| PF00581.19 | Rhodanese | 139 | 252 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Cysteine and methionine metabolism | thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1;EC:2.8.1.2] | ko00270 | K01011 |
| Sulfur relay system | thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1;EC:2.8.1.2] | ko04122 | K01011 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.