PH01005359G0100's details annotation
1.Annotation
ICBR annotation: pyridoxal-dependent decarboxylase protein, putative, expressed
Blast result AT4G34710 : 1.00E-134
Blast annotation: arginine decarboxylase 2
2.Location
Scaffold: PH01005359
Strand: -
| Region | Start | End |
| gene | 55234 | 57678 |
| mRNA | 55234 | 57678 |
| exon | 55234 | 56382 |
| exon | 56435 | 57678 |
| CDS | 55412 | 56382 |
| CDS | 56435 | 57230 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02784.15 | Orn_Arg_deC_N | 88 | 260 |
| PF02784.15 | Orn_Arg_deC_N | 265 | 331 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Arginine and proline metabolism | arginine decarboxylase [EC:4.1.1.19] | ko00330 | K01583 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0006527 | arginine catabolic process |
| GO:0008295 | spermidine biosynthetic process |
| GO:0008792 | arginine decarboxylase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.